Exploratory plots for SNP and sample summary

Generates exploratory plots: MAF histograms, HWE plots, heterozygosity scatter, MDS, and dendrogram.

exploratory.plots(
  snp.summary,
  snps.plot,
  sample.summary,
  samples.plot,
  distm,
  glabels,
  mds.plot,
  hierq.plot
)

Arguments

snp.summary

Data frame with SNP summary.

snps.plot

Filename for SNP histogram plot.

sample.summary

Data frame with sample summary.

samples.plot

Filename for heterozygosity plot.

distm

Distance matrix for samples.

glabels

Sample labels for plots.

mds.plot

Filename for MDS plot.

hierq.plot

Filename for hierarchical cluster plot.

Value

NULL (plots are saved as JPEG files)

Author

Roberto Higa, adapted by Vinicius Junqueira

Examples

# Requires proper SNP and sample summary data frames