Subset an SNPDataLong object — Subset • SNPtools

Subsets an SNPDataLong object by rows (individuals) or columns (SNPs). You can specify which individuals or SNP markers to keep or remove.

Subset(object, index, margin = 1, keep = TRUE)

# S4 method for class 'SNPDataLong'
Subset(object, index, margin = 1, keep = TRUE)

Arguments

object: A SNPDataLong object.
index: Character vector with row (individual) or column (SNP) names to filter.
margin: Integer: 1 = rows (individuals), 2 = columns (SNPs).
keep: Logical; if TRUE, keeps the specified names; if FALSE, removes them.

A new SNPDataLong object, subsetted accordingly.