Identifies Mendelian inconsistencies between father-child pairs.
check.mendelian.inconsistencies(genotypes, father, child)
Arguments
- genotypes
Genotype matrix.
- father
Vector of father sample IDs.
- child
Vector of child sample IDs.
Value
Data frame summarizing inconsistencies per pair.
Examples
set.seed(1)
genotypes <- matrix(sample(1:3, 30, TRUE), nrow = 3,
dimnames = list(c("F1", "C1", "C2"), NULL))
check.mendelian.inconsistencies(genotypes,
father = "F1",
child = c("C1", "C2"))
#> F1 - C1 = 2 5 0.4
#> F1 - C2 = 1 5 0.2
#> Father Child N Total Rate
#> 1 F1 C1 2 5 0.4
#> 2 F1 C2 1 5 0.2